Resources
The provision of infrastructure by means of software, tools and data is part of the mission of the INM-7. Below you can find the details about the services that we offer.
Resources
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ANIMA is the Archive of Neuroimaging Meta-Analyses. |
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The JuBrain Anatomy Toolbox (a.k.a. SPM Anatomy Toolbox) is an SPM plugin with probabilistic cytoarchitectonic maps for combination with functional neuroimaging data. |
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JuSpace is a toolbox allowing for cross-modal correlation of MRI-based measures with nuclear imaging derived estimates covering various neurotransmitter systems including dopaminergic, serotonergic, noradrenergic, and GABAergic (gamma-aminobutric acid) neurotransmission. |
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The DCTS webtool is an online Dimensions and Clustering Tool for assessing schizophrenia Symptomatology based on the Positive and Negative Syndrome Scale (PANSS). |
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DataLad aims to provide access to scientific data available from various sources (e.g. lab or consortium websites such as Human Connectome; data sharing portals such as OpenfMRI and CRCNS) through a single convenient interface and integrated with your software package managers (such as APT in Debian). Although initially targeting neuroimaging and neuroscience data in general, it is designed for broader use and we welcome a wide range of contributions from other domains. |
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NeuroDebian provides a large collection of popular neuroscience research software for the Debian operating system as well as Ubuntu and other derivatives. Popular packages include AFNI, FSL, PyMVPA and many others. |
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PyMVPA is a Python package intended to ease statistical learning analyses of large datasets. It offers an extensible framework with a high-level interface to a broad range of algorithms for classification, regression, feature selection, data import and export. It is designed to integrate well with related software packages, such as scikit-learn, shogun, MDP, etc. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is free software and requires nothing but free-software to run. |
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Studyforrest is an open invitation to anyone and everyone to participate in a decentralized effort to explore the opportunities of open science in neuroimaging. We aim to document how much (scientific) value can be generated from a data release — from the publication of scientific findings derived from this dataset, algorithms and methods evaluated on this dataset, and/or extensions of this dataset by acquisition and incorporation of new data. |
| Connectivity-Based Parcellation (CBP) Regional connectivity-based parcellation (CBP) is a procedure for regional mapping by long-range connectivity profiles (Eickhoff et al., 2015), revealing brain organization within a region-of-interest (ROI). |
